ICD-10 Coding for Atypical Pneumonia – Key Guidelines

by | Posted: Mar 27, 2025 | Medical Billing, Medical Coding

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Atypical pneumonia is an infectious condition that is caused by bacteria different from the more common ones that cause pneumonia. Also referred to as walking pneumonia, this condition is caused by less common pathogens such as Mycoplasma pneumoniae, Chlamydia pneumoniae, or Legionella pneumophila. Unlike typical pneumonia caused by bacteria (such as streptococcus pneumoniae), atypical pneumonia often presents with milder symptoms, making its diagnosis and coding complex. The condition commonly affects people younger than age 40. For healthcare providers, accurate documentation and precise ICD-10 coding of atypical pneumonia are crucial for effective treatment planning and reimbursement. Documentation must provide complete details of patient history, symptoms, clinical findings, diagnostic tests, and treatment plan. Partnering with a reliable medical billing company can ensure accurate code assignment, effective documentation, and clear communication of atypical pneumonia diagnoses.

Atypical pneumonia is characterized by symptoms like persistent dry cough, mild fever, fatigue, chest discomfort and shortness of breath. These symptoms can overlap with other respiratory illnesses, making accurate coding crucial. Therefore, it is essential for healthcare professionals to document the specific pathogen or clinical presentation to support proper ICD-10 code selection.

ICD-10 Codes for Atypical Pneumonia

ICD-10 codes for atypical pneumonia depend on the causative agent or its unspecified nature. Here are some commonly used codes –

  • J15.7 – Pneumonia due to Mycoplasma pneumoniae.
  • J16.0 Chlamydial pneumonia
  • J16.8 Pneumonia due to other specified infectious organisms
  • J18.9 – Pneumonia, unspecified organism (used when no causative agent is documented).
  • A48.1 – Legionnaires’ disease (Legionella pneumophila infection).

Selecting the right code ensures accuracy, especially for conditions where the pathogen is documented.

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Key Documentation Requirements for Atypical Pneumonia

Accurate Coding of Atypical Pneumonia – Documentation Guidelines

Precise documentation is the cornerstone of proper ICD-10 coding.

Here are the key documentation requirements for atypical pneumonia –

  • Specify the Pathogen – Specificity in coding depends heavily on identifying the causative agent of atypical pneumonia. ICD-10 codes such as J15.7 (Mycoplasma) or J16.0 (Chlamydia) are pathogen-specific, and using them ensures better claim accuracy and higher reimbursement potential. Laboratory test results or clinical diagnoses should specify whether pathogens are involved. Include results from laboratory tests like PCR, culture, or serology that confirm the presence of pathogens such as Mycoplasma pneumoniae, Chlamydia pneumoniae, or Legionella pneumophila. If pathogen identification is pending, indicate the suspected pathogen and update documentation once results are available. This helps the medical billing company to correctly assign a more precise ICD-10 code. Without this information, coders may default to general codes, reducing claim specificity and affecting reimbursement rates.
  • Detail the Symptoms – Atypical pneumonia presents differently from typical pneumonia. Documenting specific symptoms helps coders differentiate it from other respiratory conditions like bronchitis or viral infections. Include all reported symptoms, even if they are mild. List primary symptoms such as a persistent dry cough, mild fever, fatigue, chest discomfort, or shortness of breath. Record secondary symptoms like headache, muscle pain, or gastrointestinal issues. Mention the duration and severity of symptoms to guide code selection. For instance, prolonged mild symptoms may indicate walking pneumonia. Detailed symptom descriptions also support proper diagnosis, coding and billing.
  • Avoid Ambiguity – Vague documentation like “respiratory infection” or “chest congestion” can lead to misclassification. This may make it difficult to assign specific codes, often leading to general or unspecified codes like J18.9 (Pneumonia, unspecified organism), which may not reflect the complexity of the case. Rather, use specific terms like “atypical pneumonia” or “community-acquired atypical pneumonia” as this improves claim accuracy and minimizes delays. In addition, include any diagnostic procedures performed, such as chest X-rays or CT scans, that indicate the type and extent of infection.
  • Include Supporting Information – Comorbid conditions and complications influence the severity of pneumonia and the choice of ICD-10 codes. Documenting comorbidities or related complications like respiratory distress, pleural effusion or pre-existing conditions like COPD, asthma or diabetes helps coders assign codes reflecting the complexity of the case, potentially increasing reimbursement. For example, if atypical pneumonia leads to pleural effusion, code J90 (Pleural effusion, not elsewhere classified) may also apply. Specify any hospital-acquired infections if the pneumonia developed after admission.
  • Stay Updated on Coding Guidelines – The ICD-10 code set undergoes regular updates. Outdated documentation can result in incorrect coding and claim rejections. Regularly review coding manuals to stay well informed about new codes and requirements. Ensure documentation aligns with the latest Clinical Documentation Improvement (CDI) best practices. Healthcare providers can collaborate with a medical coding company to ensure compliance with the latest standards.
  • Support with Diagnostic Evidence – Claims often require evidence to support the chosen ICD-10 code. Documentation backed by diagnostic tests reduces the risk of claim denials. Include test results like blood cultures, sputum samples, or imaging studies (e.g. chest X-rays showing patchy infiltrates characteristic of atypical pneumonia). Document the findings of physical examinations, such as abnormal breath sounds, rales, or wheezing. Provide physician notes indicating the clinical rationale for the diagnosis.

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Accurate ICD-10 coding for atypical pneumonia is essential for proper reimbursement and effective patient care. The coding rules can be complex, so partnering with a company that specializes in billing and coding for respiratory issues can ensure accurate paperwork and coding. This will ensure compliance with current coding standards and optimizes the revenue cycle for healthcare providers.

Meghann Drella

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